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SRX1456444: GSM1958574: Tu-TErep3; Tetranychus urticae; RNA-Seq
1 ION_TORRENT (Ion Torrent Proton) run: 15.5M spots, 2.2G bases, 1.6Gb downloads

Submitted by: NCBI (GEO)
Study: Next Generation Sequencing Facilitates Quantitative Analysis of Tetranychus urticae and Its Sibling Species Tetranychus cinnabarinus Transcriptomes
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Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of differentially expressed genes (DEG) between the treated samples of mites.The goal of the study is to elucidate the invasion mechanism that results in the continuous expansion of Tetranychus urticae that has occurred in China. Methods:Transcriptome profiling by RNA sequencing is becoming an attractive method as it facilitates rapid generation, identification and quantification of large number of transcripts, even in the species where no prior genome sequence information is available. Results:the expression of 10 P450(cytochrome P450 monooxygenases), 6 GST(glutathione S-transferases), 13 CCE(carboxy/cholinesterases) and other novel candidate genes was higher (>2-fold) in T. urticae than in T. cinnabarinus as detected by using the digital gene expression (DGE) method. Overall design: T .cinnabarinus and T. urticae, which were exposed to abamectin, fenpropathrin and tebufenpyrad, and preexposed mites were used for constructing RNA-seq libraries. The experiment was performed with three biological replicates, resulting in total of 24 RNA-seq libraries for sequencing.
Sample: Tu-TErep3
SAMN04302854 • SRS1184025 • All experiments • All runs
Library:
Instrument: Ion Torrent Proton
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted from 2 day-old adult mites using the RNeasy plus Micro Kit (Qiagen, Hilden, Germany). Genomic DNA was removed using a genomic DNA elimination column supplied with the kit. The Ribosomal RNA depletion was carried out using RiboMinus RNA plant kit for RNA-Seq (Life Technologies, CA). The whole transcriptome cDNA library was prepared using Ion Total RNA-Seq kit V2 (Life Technologies Corporation, CA).
Experiment attributes:
GEO Accession: GSM1958574
Links:
Runs: 1 run, 15.5M spots, 2.2G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR296699615,496,1772.2G1.6Gb2015-12-03

ID:
2058527

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